Gostaria de rodar um Shell script salvando os arquivos csv. [RESOLVIDO]

matbnas
(usa Ubuntu)

Enviado em 18/08/2015 - 14:37h

Este script tem o objetivo de coletar uma gama de informaçoes das proteinas coletadas. Porem, gostaria de salvar os arquivos em csv.

for i in `ls` ;do#!/bin/bash
#currdir=$PWD
#cd $currdir

step1(){
rm -f list list1
find /Users/matheus/Desktop/Pdbpdg/ -name *.txt > list
cat list | sed -e 's/ /\\ /g' >list1
for i in `seq 2 12`;do rm -f list$i;done
rm -f list111 list1111 list66 list666
rm -f tabelatestefpocket-Pocket tabelatestefpocket-Druggability tabelatestefpocket-Number tabelatestefpocket-SASA-TOTAL tabelatestefpocket-SASA-POLAR tabelatestefpocket-SASA-APOLAR tabelatestefpocket-Volume Supertable.txt

while read -r linha ; do echo -e cat "$linha" >> list2 ;done < list1

for i in `seq 1 3502`;do echo "| head -n20 | grep Pocket >> tabelatestefpocket-Pocket" >> list3 ;done
for i in `seq 1 3502`;do echo "| head -n20 | grep Druggability >> tabelatestefpocket-Druggability" >> list4 ;done
for i in `seq 1 3502`;do echo "| head -n20 | grep Number >> tabelatestefpocket-Number" >> list5 ;done
for i in `seq 1 3502`;do echo "| head -n5 | grep SASA >> tabelatestefpocket-SASA-TOTAL" >> list6 ;done
for i in `seq 1 3502`;do echo "| head -n6 | tail -1 | grep SASA >> tabelatestefpocket-SASA-POLAR" >> list66 ;done
for i in `seq 1 3502`;do echo "| head -n7 | tail -1 | grep SASA >> tabelatestefpocket-SASA-APOLAR" >> list666 ;done
for i in `seq 1 3502`;do echo "| head -n8 | grep Volume >> tabelatestefpocket-Volume" >> list7 ;done
paste list2 list3 > list8
paste list2 list4 > list9
paste list2 list5 > list10
paste list2 list6 > list11
paste list2 list66 > list111
paste list2 list666 > list1111
paste list2 list7 > list12
chmod 700 list8
chmod 700 list9
chmod 700 list10
chmod 700 list11
chmod 700 list111
chmod 700 list1111
chmod 700 list12
./list8
./list9
./list10
./list11
./list111
./list1111
./list12

cat list2 |grep -o -P '.{0,11}info.{0,4}' > datalist


paste datalist tabelatestefpocket-Pocket tabelatestefpocket-Druggability tabelatestefpocket-Number tabelatestefpocket-SASA-TOTAL tabelatestefpocket-SASA-POLAR tabelatestefpocket-SASA-APOLAR tabelatestefpocket-Volume > Supertable.txt

}




step2(){

cd $i
head -n20 *.txt | grep Pocket > tabelatestefpocket-$i
head -n20 *.txt | grep Druggability >> tabelatestefpocket-$i
head -n20 *.txt | grep Number >> tabelatestefpocket-$i
head -n20 *.txt | grep SASA >> tabelatestefpocket-$i
head -n20 *.txt | grep Volume >> tabelatestefpocket-$i
done

exit
}

## run
step1
#step2
#step0

matbnas
(usa Ubuntu)

Enviado em 18/08/2015 - 19:08h

O programa está funcionando. Vou mostrar o resultado. Mas agora quero outra função.
clean-1rcw_info.txt Pocket 1 : Druggability Score : 0.372 Number of Alpha Spheres : 178 Total SASA : 955.272 Polar SASA : 467.390 Apolar SASA : 487.882 Volume : 1908.128
clean-1syy_info.txt Pocket 1 : Druggability Score : 0.020 Number of Alpha Spheres : 67 Total SASA : 292.273 Polar SASA : 169.095 Apolar SASA : 123.178 Volume : 533.517
clean-2ani_info.txt Pocket 1 : Druggability Score : 0.050 Number of Alpha Spheres : 63 Total SASA : 310.276 Polar SASA : 158.115 Apolar SASA : 152.161 Volume : 692.921
clean-2iu8_info.txt Pocket 1 : Druggability Score : 0.520 Number of Alpha Spheres : 213 Total SASA : 844.511 Polar SASA : 289.497 Apolar SASA : 555.014 Volume : 1622.706
clean-2iu9_info.txt Pocket 1 : Druggability Score : 0.654 Number of Alpha Spheres : 447 Total SASA : 1714.230 Polar SASA : 634.333 Apolar SASA : 1079.896 Volume : 2621.943
clean-2iua_info.txt Pocket 1 : Druggability Score : 0.708 Number of Alpha Spheres : 543 Total SASA : 1969.055 Polar SASA : 688.968 Apolar SASA : 1280.086 Volume : 3823.131
clean-2m1b_info.txt Pocket 1 : Druggability Score : 0.141 Number of Alpha Spheres : 130 Total SASA : 471.050 Polar SASA : 211.409 Apolar SASA : 259.640 Volume : 1219.123
clean-3asa_info.txt Pocket 1 : Druggability Score : 0.776 Number of Alpha Spheres : 278 Total SASA : 1148.722 Polar SASA : 462.789 Apolar SASA : 685.933 Volume : 2468.349
clean-3asb_info.txt Pocket 1 : Druggability Score : 0.383 Number of Alpha Spheres : 129 Total SASA : 356.439 Polar SASA : 136.651 Apolar SASA : 219.788 Volume : 834.904
clean-3del_info.txt Pocket 1 : Druggability Score : 0.171 Number of Alpha Spheres : 234 Total SASA : 1080.701 Polar SASA : 590.403 Apolar SASA : 490.297 Volume : 1777.053
clean-3dja_info.txt Pocket 1 : Druggability Score : 0.090 Number of Alpha Spheres : 305 Total SASA : 968.274 Polar SASA : 573.380 Apolar SASA : 394.895 Volume : 1658.120
clean-3dor_info.txt Pocket 1 : Druggability Score : 0.093 Number of Alpha Spheres : 461 Total SASA : 1539.166 Polar SASA : 872.099 Apolar SASA : 667.066 Volume : 3367.405
clean-3dpm_info.txt Pocket 1 : Druggability Score : 0.088 Number of Alpha Spheres : 236 Total SASA : 774.257 Polar SASA : 369.701 Apolar SASA : 404.556 Volume : 1503.783
clean-3dpn_info.txt Pocket 1 : Druggability Score : 0.667 Number of Alpha Spheres : 232 Total SASA : 781.190 Polar SASA : 381.465 Apolar SASA : 399.725 Volume : 1360.492
clean-3gqs_info.txt Pocket 1 : Druggability Score : 0.212 Number of Alpha Spheres : 60 Total SASA : 224.078 Polar SASA : 73.125 Apolar SASA : 150.954 Volume : 353.268
clean-3k29_info.txt Pocket 1 : Druggability Score : 0.259 Number of Alpha Spheres : 51 Total SASA : 245.822 Polar SASA : 90.038 Apolar SASA : 155.784 Volume : 624.253
clean-3n08_info.txt Pocket 1 : Druggability Score : 0.112 Number of Alpha Spheres : 279 Total SASA : 1121.928 Polar SASA : 555.550 Apolar SASA : 566.378 Volume : 2436.250
clean-3q7r_info.txt Pocket 1 : Druggability Score : 0.407 Number of Alpha Spheres : 78 Total SASA : 305.473 Polar SASA : 204.033 Apolar SASA : 101.441 Volume : 700.963
clean-3q7s_info.txt Pocket 1 : Druggability Score : 0.824 Number of Alpha Spheres : 165 Total SASA : 558.270 Polar SASA : 287.761 Apolar SASA : 270.509 Volume : 964.123
clean-3q7t_info.txt Pocket 1 : Druggability Score : 0.873 Number of Alpha Spheres : 84 Total SASA : 322.263 Polar SASA : 116.966 Apolar SASA : 205.297 Volume : 545.430
clean-3qh6_info.txt Pocket 1 : Druggability Score : 0.217 Number of Alpha Spheres : 81 Total SASA : 203.571 Polar SASA : 77.344

tonyhts
(usa Arch Linux)

Enviado em 18/08/2015 - 19:58h

Que bom !

Qual seria a função?

OBS:: quando for postar codigos ou coentúdo de arquivos, coloque entre tags <code>.


abs
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